PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17746A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LBD
Protein Properties Length: 180aa    MW: 19776.7 Da    PI: 9.9623
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17746AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260994.8e-3171081100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilk 82 
                                aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ +++ +e  r++a+++l++eA +r rdP +G+++ +  
  Oropetium_20150105_17746A   7 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHLVFGVANLTKLVVKANATEpaRRRAAETLTWEALWRERDPSEGCYREVAG 90 
                                7********************************************9888555445***************************** PP

                     DUF260  83 lqqqleqlkaelallkee 100
                                l+++ + l++e a+l+++
  Oropetium_20150105_17746A  91 LRRENAVLRSENAALRRQ 108
                                ********9999988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.3176109IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-277105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MMTSGGACAV CKHQRRKCEP NCELAAYFPA NRMNDFRALH LVFGVANLTK LVVKANATEP  60
ARRRAAETLT WEALWRERDP SEGCYREVAG LRRENAVLRS ENAALRRQFA SYGGGVAGGC  120
YNSNNGSAAP ANGGXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXAAITM IRGNMNNPR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703065e-99HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565566.11e-60PREDICTED: LOB domain-containing protein 7-like
TrEMBLI1HDS91e-60I1HDS9_BRADI; Uncharacterized protein
STRINGBRADI2G08480.13e-60(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-23LOB domain-containing protein 2